No. words: 1374; after pruning: 1348


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:645)  619  0.00 0.00 0.31  (UMN172F)_D04_BE499696As02P176H02P176H051F1_026.ab1        1   647 (39)  C (UMN172R)_D04_BE499696As02P176H02P176H051R1_026.ab1   (43)   645     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C (UMN172R)_D04_BE499696As02P176H02P176H051R1_026.ab1   688 
  375    (UMN172F)_D04_BE499696As02P176H02P176H051F1_026.ab1   332 
  611  C (UMN172R)_D04_BE499696As02P176H02P176H051R1_026.ab1    78 
  623    (UMN172F)_D04_BE499696As02P176H02P176H051F1_026.ab1   580 
  627  C (UMN172R)_D04_BE499696As02P176H02P176H051R1_026.ab1    62 
  631    (UMN172F)_D04_BE499696As02P176H02P176H051F1_026.ab1   588 
  639  C (UMN172R)_D04_BE499696As02P176H02P176H051R1_026.ab1    50 
  651    (UMN172F)_D04_BE499696As02P176H02P176H051F1_026.ab1   608 
Contig length: old 728, new 729

Contig length: old 729, new 729
New start: 0