No. words: 1448; after pruning: 1422 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 2 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 9 0.0 11.8 (1,1:687) 643 0.29 0.15 0.15 (UMN172F)_E04_BE499696At01P176H02P176H051F1_024.ab1 2 679 (42) C (UMN172R)_E04_BE499696At01P176H02P176H051R1_024.ab1 (40) 687 10 * Pass: 3 #reads #contigs (not counting singlets) 2 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 1 0 Gap # merges # failures size 9 1 0 Offset 0 1 Pass 4 Gap Score Pass: 4 #reads #contigs (not counting singlets) 2 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Read equivalence class histogram: 2 1 Chimera merges: Contig 1: 330 nodes 167 str. conn. components Path 1 C (UMN172R)_E04_BE499696At01P176H02P176H051R1_024.ab1 727 611 (UMN172F)_E04_BE499696At01P176H02P176H051F1_024.ab1 572 615 C (UMN172R)_E04_BE499696At01P176H02P176H051R1_024.ab1 113 623 (UMN172F)_E04_BE499696At01P176H02P176H051F1_024.ab1 584 639 C (UMN172R)_E04_BE499696At01P176H02P176H051R1_024.ab1 89 659 (UMN172F)_E04_BE499696At01P176H02P176H051F1_024.ab1 620 663 C (UMN172R)_E04_BE499696At01P176H02P176H051R1_024.ab1 65 671 (UMN172F)_E04_BE499696At01P176H02P176H051F1_024.ab1 632 681 C (UMN172R)_E04_BE499696At01P176H02P176H051R1_024.ab1 47 693 (UMN172F)_E04_BE499696At01P176H02P176H051F1_024.ab1 654 701 C (UMN172R)_E04_BE499696At01P176H02P176H051R1_024.ab1 27 713 (UMN172F)_E04_BE499696At01P176H02P176H051F1_024.ab1 674 Contig length: old 760, new 760 Contig length: old 760, new 760 New start: 0