No. words: 1444; after pruning: 1418


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 14.1 (1,1:677)  648  0.44 0.00 0.00  (UMN172F)_F04_BE499696At02P176H02P176H051F1_022.ab1        2   678 (46)  C (UMN172R)_F04_BE499696At02P176H02P176H051R1_022.ab1   (43)   677     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  334 nodes

 169 str. conn. components

Path
    1  C (UMN172R)_F04_BE499696At02P176H02P176H051R1_022.ab1   720 
  118    (UMN172F)_F04_BE499696At02P176H02P176H051F1_022.ab1    76 
  122  C (UMN172R)_F04_BE499696At02P176H02P176H051R1_022.ab1   599 
  334    (UMN172F)_F04_BE499696At02P176H02P176H051F1_022.ab1   292 
  610  C (UMN172R)_F04_BE499696At02P176H02P176H051R1_022.ab1   111 
  630    (UMN172F)_F04_BE499696At02P176H02P176H051F1_022.ab1   588 
  642  C (UMN172R)_F04_BE499696At02P176H02P176H051R1_022.ab1    79 
  658    (UMN172F)_F04_BE499696At02P176H02P176H051F1_022.ab1   616 
  705  C (UMN172R)_F04_BE499696At02P176H02P176H051R1_022.ab1    16 
  717    (UMN172F)_F04_BE499696At02P176H02P176H051F1_022.ab1   675 
Contig length: old 766, new 766

Contig length: old 766, new 766
New start: 0