No. words: 1552; after pruning: 1526


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:619)  598  0.00 0.00 0.16  (UMN173F)_B08_BE499696Ld05P176H02P176H051F1_062.ab1        1   620 (172)  C (UMN173R)_B08_BE499696Ld05P176H02P176H051R1_062.ab1   (141)   619     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C (UMN173R)_B08_BE499696Ld05P176H02P176H051R1_062.ab1   760 
  177    (UMN173F)_B08_BE499696Ld05P176H02P176H051F1_062.ab1    36 
  181  C (UMN173R)_B08_BE499696Ld05P176H02P176H051R1_062.ab1   580 
  389    (UMN173F)_B08_BE499696Ld05P176H02P176H051F1_062.ab1   248 
  553  C (UMN173R)_B08_BE499696Ld05P176H02P176H051R1_062.ab1   208 
  601    (UMN173F)_B08_BE499696Ld05P176H02P176H051F1_062.ab1   460 
  693  C (UMN173R)_B08_BE499696Ld05P176H02P176H051R1_062.ab1    68 
  701    (UMN173F)_B08_BE499696Ld05P176H02P176H051F1_062.ab1   560 
  747  C (UMN173R)_B08_BE499696Ld05P176H02P176H051R1_062.ab1    15 
  755    (UMN173F)_B08_BE499696Ld05P176H02P176H051F1_062.ab1   614 
Contig length: old 932, new 933

Contig length: old 933, new 933
New start: 0