No. words: 1554; after pruning: 1528


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:618)  582  0.65 0.16 0.16  (UMN173F)_C08_BE499696Ld06P176H02P176H051F1_060.ab1        1   619 (151)  C (UMN173R)_C08_BE499696Ld06P176H02P176H051R1_060.ab1   (165)   619     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C (UMN173R)_C08_BE499696Ld06P176H02P176H051R1_060.ab1   784 
  411    (UMN173F)_C08_BE499696Ld06P176H02P176H051F1_060.ab1   245 
  511  C (UMN173R)_C08_BE499696Ld06P176H02P176H051R1_060.ab1   274 
  535    (UMN173F)_C08_BE499696Ld06P176H02P176H051F1_060.ab1   369 
  575  C (UMN173R)_C08_BE499696Ld06P176H02P176H051R1_060.ab1   210 
  715    (UMN173F)_C08_BE499696Ld06P176H02P176H051F1_060.ab1   549 
  719  C (UMN173R)_C08_BE499696Ld06P176H02P176H051R1_060.ab1    66 
  723    (UMN173F)_C08_BE499696Ld06P176H02P176H051F1_060.ab1   557 
Contig length: old 935, new 936

Contig length: old 936, new 936
New start: 0