No. words: 889; after pruning: 863


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    7   -4.6 -4.6 (1,1:45)   54 13.68 0.00 0.00  (UMN173F)_D08_BE499696Ld07P176H02P176H051F1_058.ab1       51   145 (637)    (UMN173R)_D08_BE499696Ld07P176H02P176H051R1_058.ab1        6   100 (7) *
  Worst pair: offset 0 
LLR breakdown: discreps: -4.1 (<20 part: -4.1 (#=13), >20:0.0 (#=0); in HQ: -4.1, out HQ 0.0), match: 1.8  trail: -1.2  lead: -1.2  total: -4.7   54 13.68 0.00 0.00  (UMN173F)_D08_BE499696Ld07P176H02P176H051F1_058.ab1       51   145 (637)    (UMN173R)_D08_BE499696Ld07P176H02P176H051R1_058.ab1        6   100 (7) *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.6       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  16 nodes

 10 str. conn. components

Path
    1    (UMN173F)_D08_BE499696Ld07P176H02P176H051F1_058.ab1     1 
Contig length: old 782, new 782

Contig length: old 782, new 782
New start: 0