No. words: 1662; after pruning: 1636


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:666)  637  0.15 0.15 0.00  (UMN173F)_F08_BE499696Ld09P176H02P176H051F1_054.ab1        1   667 (184)  C (UMN173R)_F08_BE499696Ld09P176H02P176H051R1_054.ab1   (143)   668     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C (UMN173R)_F08_BE499696Ld09P176H02P176H051R1_054.ab1   811 
  178    (UMN173F)_F08_BE499696Ld09P176H02P176H051F1_054.ab1    34 
  186  C (UMN173R)_F08_BE499696Ld09P176H02P176H051R1_054.ab1   626 
  198    (UMN173F)_F08_BE499696Ld09P176H02P176H051F1_054.ab1    54 
  210  C (UMN173R)_F08_BE499696Ld09P176H02P176H051R1_054.ab1   602 
  218    (UMN173F)_F08_BE499696Ld09P176H02P176H051F1_054.ab1    74 
  234  C (UMN173R)_F08_BE499696Ld09P176H02P176H051R1_054.ab1   578 
  430    (UMN173F)_F08_BE499696Ld09P176H02P176H051F1_054.ab1   286 
  546  C (UMN173R)_F08_BE499696Ld09P176H02P176H051R1_054.ab1   266 
  662    (UMN173F)_F08_BE499696Ld09P176H02P176H051F1_054.ab1   518 
  710  C (UMN173R)_F08_BE499696Ld09P176H02P176H051R1_054.ab1   102 
  730    (UMN173F)_F08_BE499696Ld09P176H02P176H051F1_054.ab1   586 
  746  C (UMN173R)_F08_BE499696Ld09P176H02P176H051R1_054.ab1    66 
  762    (UMN173F)_F08_BE499696Ld09P176H02P176H051F1_054.ab1   618 
  766  C (UMN173R)_F08_BE499696Ld09P176H02P176H051R1_054.ab1    46 
  770    (UMN173F)_F08_BE499696Ld09P176H02P176H051F1_054.ab1   626 
  800  C (UMN173R)_F08_BE499696Ld09P176H02P176H051R1_054.ab1    12 
  808    (UMN173F)_F08_BE499696Ld09P176H02P176H051F1_054.ab1   664 
Contig length: old 995, new 995

Contig length: old 995, new 995
New start: 0