No. words: 1557; after pruning: 1531


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:620)  597  0.16 0.00 0.16  (UMN173F)_G08_BE499696Ld10P176H02P176H051F1_052.ab1        1   621 (148)  C (UMN173R)_G08_BE499696Ld10P176H02P176H051R1_052.ab1   (168)   620     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C (UMN173R)_G08_BE499696Ld10P176H02P176H051R1_052.ab1   788 
  232    (UMN173F)_G08_BE499696Ld10P176H02P176H051F1_052.ab1    64 
  236  C (UMN173R)_G08_BE499696Ld10P176H02P176H051R1_052.ab1   553 
  336    (UMN173F)_G08_BE499696Ld10P176H02P176H051F1_052.ab1   168 
  512  C (UMN173R)_G08_BE499696Ld10P176H02P176H051R1_052.ab1   277 
  680    (UMN173F)_G08_BE499696Ld10P176H02P176H051F1_052.ab1   512 
  712  C (UMN173R)_G08_BE499696Ld10P176H02P176H051R1_052.ab1    77 
  720    (UMN173F)_G08_BE499696Ld10P176H02P176H051F1_052.ab1   552 
Contig length: old 936, new 937

Contig length: old 937, new 937
New start: 0