No. words: 1554; after pruning: 1528


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:618)  593  0.16 0.00 0.16  (UMN173F)_H08_BE499696Ld11P176H02P176H051F1_050.ab1        1   619 (175)  C (UMN173R)_H08_BE499696Ld11P176H02P176H051R1_050.ab1   (142)   618     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C (UMN173R)_H08_BE499696Ld11P176H02P176H051R1_050.ab1   760 
  386    (UMN173F)_H08_BE499696Ld11P176H02P176H051F1_050.ab1   244 
  538  C (UMN173R)_H08_BE499696Ld11P176H02P176H051R1_050.ab1   223 
  650    (UMN173F)_H08_BE499696Ld11P176H02P176H051F1_050.ab1   508 
  658  C (UMN173R)_H08_BE499696Ld11P176H02P176H051R1_050.ab1   103 
  674    (UMN173F)_H08_BE499696Ld11P176H02P176H051F1_050.ab1   532 
  682  C (UMN173R)_H08_BE499696Ld11P176H02P176H051R1_050.ab1    79 
  690    (UMN173F)_H08_BE499696Ld11P176H02P176H051F1_050.ab1   548 
  694  C (UMN173R)_H08_BE499696Ld11P176H02P176H051R1_050.ab1    67 
  698    (UMN173F)_H08_BE499696Ld11P176H02P176H051F1_050.ab1   556 
Contig length: old 935, new 936

Contig length: old 936, new 936
New start: 0