No. words: 1335; after pruning: 1309


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:628)  602  0.00 0.00 0.32  (UMN172F)_B04_BE499696Tu02P176H02P176H051F1_030.ab1        1   629 (35)  C (UMN172R)_B04_BE499696Tu02P176H02P176H051R1_030.ab1   (43)   628     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C (UMN172R)_B04_BE499696Tu02P176H02P176H051R1_030.ab1   671 
  243    (UMN172F)_B04_BE499696Tu02P176H02P176H051F1_030.ab1   200 
  583  C (UMN172R)_B04_BE499696Tu02P176H02P176H051R1_030.ab1    89 
  599    (UMN172F)_B04_BE499696Tu02P176H02P176H051F1_030.ab1   556 
  607  C (UMN172R)_B04_BE499696Tu02P176H02P176H051R1_030.ab1    65 
  615    (UMN172F)_B04_BE499696Tu02P176H02P176H051F1_030.ab1   572 
  648  C (UMN172R)_B04_BE499696Tu02P176H02P176H051R1_030.ab1    25 
  652    (UMN172F)_B04_BE499696Tu02P176H02P176H051F1_030.ab1   609 
Contig length: old 706, new 707

Contig length: old 707, new 707
New start: 0