No. words: 1746; after pruning: 1720


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.0 (1,1:996)  724  0.13 0.00 0.00  (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1       96   844 (0)  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   (0)   902   154 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  370 nodes

 187 str. conn. components

Path
    1    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1     1 
  247  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   751 
  251    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   251 
  255  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   743 
  259    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   259 
  323  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   675 
  331    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   331 
  335  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   663 
  343    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   343 
  375  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   623 
  379    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   379 
  407  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   591 
  415    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   415 
  419  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   579 
  423    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   423 
  455  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   543 
  475    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   475 
  479  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   519 
  487    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   487 
  511  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   487 
  515    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   515 
  519  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   479 
  531    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   531 
  539  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   459 
  555    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   555 
  559  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   439 
  571    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   571 
  575  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   423 
  587    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   587 
  591  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   407 
  631    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   631 
  635  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   363 
  707    (UMN172F)_A05_BE500510As01P176A03P176B061F1_047.ab1   707 
  711  C (UMN172R)_A05_BE500510As01P176A03P176B061R1_047.ab1   287 
Contig length: old 997, new 997

Contig length: old 997, new 997
New start: 0