No. words: 1728; after pruning: 1702


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:998)  703  0.27 0.00 0.00  (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1      178   906 (0)  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   (0)   822    94 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  360 nodes

 182 str. conn. components

Path
    1    (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1     1 
  249  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   751 
  253    (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1   253 
  325  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   675 
  333    (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1   333 
  337  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   663 
  341    (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1   341 
  377  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   623 
  385    (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1   385 
  421  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   579 
  425    (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1   425 
  457  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   543 
  461    (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1   461 
  465  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   535 
  469    (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1   469 
  473  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   527 
  477    (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1   477 
  481  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   519 
  493    (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1   493 
  501  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   499 
  513    (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1   513 
  521  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   479 
  533    (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1   533 
  541  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   459 
  573    (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1   573 
  577  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   423 
  633    (UMN172F)_B05_BE500510As02P176A03P176B061F1_045.ab1   633 
  637  C (UMN172R)_B05_BE500510As02P176A03P176B061R1_045.ab1   363 
Contig length: old 999, new 999

Contig length: old 999, new 999
New start: 0