No. words: 1532; after pruning: 1506


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:977)  520  0.90 0.00 0.00  (UMN172F)_C05_BE500510At01P176A03P176B061F1_043.ab1      218   771 (0)  C (UMN172R)_C05_BE500510At01P176A03P176B061R1_043.ab1   (0)   761   208 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1    (UMN172F)_C05_BE500510At01P176A03P176B061F1_043.ab1     1 
  335  C (UMN172R)_C05_BE500510At01P176A03P176B061R1_043.ab1   644 
  339    (UMN172F)_C05_BE500510At01P176A03P176B061F1_043.ab1   339 
  369  C (UMN172R)_C05_BE500510At01P176A03P176B061R1_043.ab1   610 
  373    (UMN172F)_C05_BE500510At01P176A03P176B061F1_043.ab1   373 
  385  C (UMN172R)_C05_BE500510At01P176A03P176B061R1_043.ab1   594 
  389    (UMN172F)_C05_BE500510At01P176A03P176B061F1_043.ab1   389 
  417  C (UMN172R)_C05_BE500510At01P176A03P176B061R1_043.ab1   562 
  429    (UMN172F)_C05_BE500510At01P176A03P176B061F1_043.ab1   429 
  649  C (UMN172R)_C05_BE500510At01P176A03P176B061R1_043.ab1   330 
  653    (UMN172F)_C05_BE500510At01P176A03P176B061F1_043.ab1   653 
  661  C (UMN172R)_C05_BE500510At01P176A03P176B061R1_043.ab1   318 
  677    (UMN172F)_C05_BE500510At01P176A03P176B061F1_043.ab1   677 
  689  C (UMN172R)_C05_BE500510At01P176A03P176B061R1_043.ab1   290 
  693    (UMN172F)_C05_BE500510At01P176A03P176B061F1_043.ab1   693 
  709  C (UMN172R)_C05_BE500510At01P176A03P176B061R1_043.ab1   270 
  717    (UMN172F)_C05_BE500510At01P176A03P176B061F1_043.ab1   717 
  737  C (UMN172R)_C05_BE500510At01P176A03P176B061R1_043.ab1   242 
  761    (UMN172F)_C05_BE500510At01P176A03P176B061F1_043.ab1   761 
  765  C (UMN172R)_C05_BE500510At01P176A03P176B061R1_043.ab1   214 
Contig length: old 978, new 978

Contig length: old 978, new 978
New start: 0