No. words: 1843; after pruning: 1817


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.8 (1,1:1016)  794  0.48 0.00 0.00  (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1       78   903 (0)  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   (0)   940   115 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  402 nodes

 203 str. conn. components

Path
    1    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1     1 
  242  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   776 
  246    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1   246 
  250  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   768 
  258    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1   258 
  326  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   692 
  330    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1   330 
  334  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   684 
  342    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1   342 
  350  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   668 
  354    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1   354 
  370  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   648 
  378    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1   378 
  386  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   632 
  390    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1   390 
  402  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   616 
  406    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1   406 
  414  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   604 
  430    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1   430 
  442  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   576 
  446    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1   446 
  454  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   564 
  478    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1   478 
  486  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   532 
  518    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1   518 
  522  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   496 
  554    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1   554 
  558  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   460 
  598    (UMN172F)_D05_BE500510At02P176A03P176B061F1_041.ab1   598 
  602  C (UMN172R)_D05_BE500510At02P176A03P176B061R1_041.ab1   416 
Contig length: old 1017, new 1017

Contig length: old 1017, new 1017
New start: 0