No. words: 1468; after pruning: 1442


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:996)  445  0.64 0.00 0.00  (UMN173F)_C09_BE500510Ld03P176A03P176B061F1_075.ab1      160   630 (0)  C (UMN173R)_C09_BE500510Ld03P176A03P176B061R1_075.ab1   (0)   838   368 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1    (UMN173F)_C09_BE500510Ld03P176A03P176B061F1_075.ab1     1 
  246  C (UMN173R)_C09_BE500510Ld03P176A03P176B061R1_075.ab1   752 
  254    (UMN173F)_C09_BE500510Ld03P176A03P176B061F1_075.ab1   254 
  258  C (UMN173R)_C09_BE500510Ld03P176A03P176B061R1_075.ab1   740 
  262    (UMN173F)_C09_BE500510Ld03P176A03P176B061F1_075.ab1   262 
  278  C (UMN173R)_C09_BE500510Ld03P176A03P176B061R1_075.ab1   720 
  286    (UMN173F)_C09_BE500510Ld03P176A03P176B061F1_075.ab1   286 
  298  C (UMN173R)_C09_BE500510Ld03P176A03P176B061R1_075.ab1   700 
  302    (UMN173F)_C09_BE500510Ld03P176A03P176B061F1_075.ab1   302 
  326  C (UMN173R)_C09_BE500510Ld03P176A03P176B061R1_075.ab1   672 
  330    (UMN173F)_C09_BE500510Ld03P176A03P176B061F1_075.ab1   330 
  334  C (UMN173R)_C09_BE500510Ld03P176A03P176B061R1_075.ab1   664 
  358    (UMN173F)_C09_BE500510Ld03P176A03P176B061F1_075.ab1   358 
  366  C (UMN173R)_C09_BE500510Ld03P176A03P176B061R1_075.ab1   632 
Contig length: old 997, new 997

Contig length: old 997, new 997
New start: 0 
S Change at: 166; seg lengths: entry 1, contig 1