No. words: 1651; after pruning: 1625


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.1 (1,1:986)  632  0.15 0.00 0.30  (UMN173F)_D09_BE500510Ld04P176A03P176B061F1_073.ab1       71   735 (0)  C (UMN173R)_D09_BE500510Ld04P176A03P176B061R1_073.ab1   (0)   916   254 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1    (UMN173F)_D09_BE500510Ld04P176A03P176B061F1_073.ab1     1 
   78  C (UMN173R)_D09_BE500510Ld04P176A03P176B061R1_073.ab1   909 
   82    (UMN173F)_D09_BE500510Ld04P176A03P176B061F1_073.ab1    82 
  278  C (UMN173R)_D09_BE500510Ld04P176A03P176B061R1_073.ab1   711 
  282    (UMN173F)_D09_BE500510Ld04P176A03P176B061F1_073.ab1   282 
  314  C (UMN173R)_D09_BE500510Ld04P176A03P176B061R1_073.ab1   675 
  338    (UMN173F)_D09_BE500510Ld04P176A03P176B061F1_073.ab1   338 
  362  C (UMN173R)_D09_BE500510Ld04P176A03P176B061R1_073.ab1   627 
  370    (UMN173F)_D09_BE500510Ld04P176A03P176B061F1_073.ab1   370 
  378  C (UMN173R)_D09_BE500510Ld04P176A03P176B061R1_073.ab1   611 
  386    (UMN173F)_D09_BE500510Ld04P176A03P176B061F1_073.ab1   386 
  390  C (UMN173R)_D09_BE500510Ld04P176A03P176B061R1_073.ab1   599 
  394    (UMN173F)_D09_BE500510Ld04P176A03P176B061F1_073.ab1   394 
  398  C (UMN173R)_D09_BE500510Ld04P176A03P176B061R1_073.ab1   591 
Contig length: old 987, new 988

Contig length: old 988, new 988
New start: 0