No. words: 1615; after pruning: 1589


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:987)  610  0.00 0.00 0.00  (UMN173F)_E09_BE500510Ld05P176A03P176B061F1_071.ab1      116   742 (0)  C (UMN173R)_E09_BE500510Ld05P176A03P176B061R1_071.ab1   (0)   873   247 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1    (UMN173F)_E09_BE500510Ld05P176A03P176B061F1_071.ab1     1 
  370  C (UMN173R)_E09_BE500510Ld05P176A03P176B061R1_071.ab1   619 
  398    (UMN173F)_E09_BE500510Ld05P176A03P176B061F1_071.ab1   398 
  414  C (UMN173R)_E09_BE500510Ld05P176A03P176B061R1_071.ab1   575 
  498    (UMN173F)_E09_BE500510Ld05P176A03P176B061F1_071.ab1   498 
  502  C (UMN173R)_E09_BE500510Ld05P176A03P176B061R1_071.ab1   487 
Contig length: old 988, new 988

Contig length: old 988, new 988
New start: 0