No. words: 1710; after pruning: 1670


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:987)  692  0.42 0.00 0.00  (UMN173F)_F09_BE500510Ld06P176A03P176B061F1_069.ab1       80   801 (0)  C (UMN173R)_F09_BE500510Ld06P176A03P176B061R1_069.ab1   (0)   909   188 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1    (UMN173F)_F09_BE500510Ld06P176A03P176B061F1_069.ab1     1 
  324  C (UMN173R)_F09_BE500510Ld06P176A03P176B061R1_069.ab1   665 
  332    (UMN173F)_F09_BE500510Ld06P176A03P176B061F1_069.ab1   332 
  336  C (UMN173R)_F09_BE500510Ld06P176A03P176B061R1_069.ab1   653 
  360    (UMN173F)_F09_BE500510Ld06P176A03P176B061F1_069.ab1   360 
  364  C (UMN173R)_F09_BE500510Ld06P176A03P176B061R1_069.ab1   625 
  396    (UMN173F)_F09_BE500510Ld06P176A03P176B061F1_069.ab1   396 
  408  C (UMN173R)_F09_BE500510Ld06P176A03P176B061R1_069.ab1   581 
Contig length: old 988, new 988

Contig length: old 988, new 988
New start: 0 
S Change at: 87; seg lengths: entry 1, contig 1