No. words: 1426; after pruning: 1400


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:993)  407  0.93 0.00 0.00  (UMN173F)_B10_BE500510Ld10P176A03P176B061F1_078.ab1      183   614 (0)  C (UMN173R)_B10_BE500510Ld10P176A03P176B061R1_078.ab1   (0)   812   381 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1    (UMN173F)_B10_BE500510Ld10P176A03P176B061F1_078.ab1     1 
  230  C (UMN173R)_B10_BE500510Ld10P176A03P176B061R1_078.ab1   765 
  234    (UMN173F)_B10_BE500510Ld10P176A03P176B061F1_078.ab1   234 
  242  C (UMN173R)_B10_BE500510Ld10P176A03P176B061R1_078.ab1   753 
  254    (UMN173F)_B10_BE500510Ld10P176A03P176B061F1_078.ab1   254 
  282  C (UMN173R)_B10_BE500510Ld10P176A03P176B061R1_078.ab1   713 
  286    (UMN173F)_B10_BE500510Ld10P176A03P176B061F1_078.ab1   286 
  322  C (UMN173R)_B10_BE500510Ld10P176A03P176B061R1_078.ab1   673 
  358    (UMN173F)_B10_BE500510Ld10P176A03P176B061F1_078.ab1   358 
  366  C (UMN173R)_B10_BE500510Ld10P176A03P176B061R1_078.ab1   629 
  392    (UMN173F)_B10_BE500510Ld10P176A03P176B061F1_078.ab1   392 
  404  C (UMN173R)_B10_BE500510Ld10P176A03P176B061R1_078.ab1   591 
Contig length: old 994, new 994

Contig length: old 994, new 994
New start: 0 
S Change at: 186; seg lengths: entry 1, contig 1