No. words: 1117; after pruning: 1091


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.2 (1,1:929)  135  5.35 0.53 1.07  (UMN173F)_C10_BE500510Ld11P176A03P176B061F1_076.ab1      141   327 (0)  C (UMN173R)_C10_BE500510Ld11P176A03P176B061R1_076.ab1   (0)   790   605 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  64 nodes

 34 str. conn. components

Path
    1    (UMN173F)_C10_BE500510Ld11P176A03P176B061F1_076.ab1     1 
  145  C (UMN173R)_C10_BE500510Ld11P176A03P176B061R1_076.ab1   786 
  164    (UMN173F)_C10_BE500510Ld11P176A03P176B061F1_076.ab1   164 
  172  C (UMN173R)_C10_BE500510Ld11P176A03P176B061R1_076.ab1   759 
  187    (UMN173F)_C10_BE500510Ld11P176A03P176B061F1_076.ab1   187 
  203  C (UMN173R)_C10_BE500510Ld11P176A03P176B061R1_076.ab1   728 
  207    (UMN173F)_C10_BE500510Ld11P176A03P176B061F1_076.ab1   207 
  220  C (UMN173R)_C10_BE500510Ld11P176A03P176B061R1_076.ab1   711 
Contig length: old 930, new 930

Contig length: old 930, new 930
New start: 0 
S Change at: 212; seg lengths: entry 1, contig 1