No. words: 1167; after pruning: 1141


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 3.4 (1,1:907)  223  3.52 0.00 0.00  (UMN173F)_D10_BE500510Ld12P176A03P176B061F1_074.ab1      331   586 (3)  C (UMN173R)_D10_BE500510Ld12P176A03P176B061R1_074.ab1   (0)   578   323 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  110 nodes

 57 str. conn. components

Path
    1    (UMN173F)_D10_BE500510Ld12P176A03P176B061F1_074.ab1     1 
  366  C (UMN173R)_D10_BE500510Ld12P176A03P176B061R1_074.ab1   543 
  370    (UMN173F)_D10_BE500510Ld12P176A03P176B061F1_074.ab1   370 
  404  C (UMN173R)_D10_BE500510Ld12P176A03P176B061R1_074.ab1   505 
  412    (UMN173F)_D10_BE500510Ld12P176A03P176B061F1_074.ab1   412 
  416  C (UMN173R)_D10_BE500510Ld12P176A03P176B061R1_074.ab1   493 
  420    (UMN173F)_D10_BE500510Ld12P176A03P176B061F1_074.ab1   420 
  460  C (UMN173R)_D10_BE500510Ld12P176A03P176B061R1_074.ab1   449 
  492    (UMN173F)_D10_BE500510Ld12P176A03P176B061F1_074.ab1   492 
  496  C (UMN173R)_D10_BE500510Ld12P176A03P176B061R1_074.ab1   413 
Contig length: old 908, new 908

Contig length: old 908, new 908
New start: 0 
S Change at: 376; seg lengths: entry 9, contig 9