No. words: 1739; after pruning: 1685


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.7 (1,1:953)  759  0.51 0.13 0.13  (UMN172F)_G05_BE500863As01P176D03P176E061F1_035.ab1      111   895 (0)  C (UMN172R)_G05_BE500863As01P176D03P176E061R1_035.ab1   (0)   844    60 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1    (UMN172F)_G05_BE500863As01P176D03P176E061F1_035.ab1     1 
  393  C (UMN172R)_G05_BE500863As01P176D03P176E061R1_035.ab1   562 
Contig length: old 954, new 954

Contig length: old 954, new 954
New start: 0