No. words: 1111; after pruning: 1085


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:626)  432  1.31 0.22 0.00  (UMN172F)_G06_BE500863At01P176E03P176E061F1_036.ab1        1   457 (0)  C (UMN172R)_G06_BE500863At01P176E03P176E061R1_036.ab1   (26)   628   171 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C (UMN172R)_G06_BE500863At01P176E03P176E061R1_036.ab1   654 
Contig length: old 654, new 654

Contig length: old 654, new 654
New start: 0