No. words: 1831; after pruning: 1777


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 17.4 (1,1:955)  845  0.81 0.00 0.00  (UMN172F)_B06_BE500863At02P176D03P176E061F1_046.ab1       23   891 (5)  C (UMN172R)_B06_BE500863At02P176D03P176E061R1_046.ab1   (1)   934    66 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  420 nodes

 212 str. conn. components

Path
    1    (UMN172F)_B06_BE500863At02P176D03P176E061F1_046.ab1     1 
  389  C (UMN172R)_B06_BE500863At02P176D03P176E061R1_046.ab1   568 
  401    (UMN172F)_B06_BE500863At02P176D03P176E061F1_046.ab1   401 
  465  C (UMN172R)_B06_BE500863At02P176D03P176E061R1_046.ab1   492 
  533    (UMN172F)_B06_BE500863At02P176D03P176E061F1_046.ab1   533 
  541  C (UMN172R)_B06_BE500863At02P176D03P176E061R1_046.ab1   416 
Contig length: old 956, new 956

Contig length: old 956, new 956
New start: 0