No. words: 1319; after pruning: 1293


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:623)  604  0.00 0.16 0.48  (UMN172F)_H06_BE500863At02P176E03P176E061F1_034.ab1        1   626 (30)  C (UMN172R)_H06_BE500863At02P176E03P176E061R1_034.ab1   (39)   624     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C (UMN172R)_H06_BE500863At02P176E03P176E061R1_034.ab1   663 
   90    (UMN172F)_H06_BE500863At02P176E03P176E061F1_034.ab1    50 
  102  C (UMN172R)_H06_BE500863At02P176E03P176E061R1_034.ab1   562 
  282    (UMN172F)_H06_BE500863At02P176E03P176E061F1_034.ab1   242 
  390  C (UMN172R)_H06_BE500863At02P176E03P176E061R1_034.ab1   274 
  534    (UMN172F)_H06_BE500863At02P176E03P176E061F1_034.ab1   494 
  578  C (UMN172R)_H06_BE500863At02P176E03P176E061R1_034.ab1    86 
  586    (UMN172F)_H06_BE500863At02P176E03P176E061F1_034.ab1   546 
  626  C (UMN172R)_H06_BE500863At02P176E03P176E061R1_034.ab1    38 
  630    (UMN172F)_H06_BE500863At02P176E03P176E061F1_034.ab1   590 
Contig length: old 695, new 696

Contig length: old 696, new 696
New start: 0