No. words: 1607; after pruning: 1581


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.4 (1,1:911)  687  0.00 0.00 0.00  (UMN173F)_E10_BE500863Ld01P176D03P176E061F1_072.ab1       56   750 (0)  C (UMN173R)_E10_BE500863Ld01P176D03P176E061R1_072.ab1   (0)   857   163 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1    (UMN173F)_E10_BE500863Ld01P176D03P176E061F1_072.ab1     1 
  331  C (UMN173R)_E10_BE500863Ld01P176D03P176E061R1_072.ab1   582 
  355    (UMN173F)_E10_BE500863Ld01P176D03P176E061F1_072.ab1   355 
  367  C (UMN173R)_E10_BE500863Ld01P176D03P176E061R1_072.ab1   546 
  423    (UMN173F)_E10_BE500863Ld01P176D03P176E061F1_072.ab1   423 
  435  C (UMN173R)_E10_BE500863Ld01P176D03P176E061R1_072.ab1   478 
  451    (UMN173F)_E10_BE500863Ld01P176D03P176E061F1_072.ab1   451 
  455  C (UMN173R)_E10_BE500863Ld01P176D03P176E061R1_072.ab1   458 
Contig length: old 912, new 912

Contig length: old 912, new 912
New start: 0