No. words: 1755; after pruning: 1729


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:969)  773  0.00 0.00 0.13  (UMN173F)_F10_BE500863Ld02P176D03P176E061F1_070.ab1       71   855 (0)  C (UMN173R)_F10_BE500863Ld02P176D03P176E061R1_070.ab1   (0)   900   117 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1    (UMN173F)_F10_BE500863Ld02P176D03P176E061F1_070.ab1     1 
  425  C (UMN173R)_F10_BE500863Ld02P176D03P176E061R1_070.ab1   547 
  429    (UMN173F)_F10_BE500863Ld02P176D03P176E061F1_070.ab1   429 
  437  C (UMN173R)_F10_BE500863Ld02P176D03P176E061R1_070.ab1   535 
  441    (UMN173F)_F10_BE500863Ld02P176D03P176E061F1_070.ab1   441 
  501  C (UMN173R)_F10_BE500863Ld02P176D03P176E061R1_070.ab1   471 
  557    (UMN173F)_F10_BE500863Ld02P176D03P176E061F1_070.ab1   557 
  573  C (UMN173R)_F10_BE500863Ld02P176D03P176E061R1_070.ab1   399 
Contig length: old 970, new 971

Contig length: old 971, new 971
New start: 0