No. words: 1520; after pruning: 1494


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   13    0.0 12.6 (1,1:915)  582  0.17 0.00 0.00  (UMN173F)_G10_BE500863Ld03P176D03P176E061F1_068.ab1       41   631 (0)  C (UMN173R)_G10_BE500863Ld03P176D03P176E061R1_068.ab1   (13)   876   286 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
13       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1    (UMN173F)_G10_BE500863Ld03P176D03P176E061F1_068.ab1     1 
  148  C (UMN173R)_G10_BE500863Ld03P176D03P176E061R1_068.ab1   769 
  152    (UMN173F)_G10_BE500863Ld03P176D03P176E061F1_068.ab1   152 
  276  C (UMN173R)_G10_BE500863Ld03P176D03P176E061R1_068.ab1   641 
  280    (UMN173F)_G10_BE500863Ld03P176D03P176E061F1_068.ab1   280 
  320  C (UMN173R)_G10_BE500863Ld03P176D03P176E061R1_068.ab1   597 
  324    (UMN173F)_G10_BE500863Ld03P176D03P176E061F1_068.ab1   324 
  328  C (UMN173R)_G10_BE500863Ld03P176D03P176E061R1_068.ab1   589 
  356    (UMN173F)_G10_BE500863Ld03P176D03P176E061F1_068.ab1   356 
  360  C (UMN173R)_G10_BE500863Ld03P176D03P176E061R1_068.ab1   557 
Contig length: old 916, new 916

Contig length: old 916, new 916
New start: 0