No. words: 1608; after pruning: 1582


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.3 (1,1:962)  635  0.00 0.00 0.00  (UMN173F)_H10_BE500863Ld04P176D03P176E061F1_066.ab1      134   778 (0)  C (UMN173R)_H10_BE500863Ld04P176D03P176E061R1_066.ab1   (0)   830   186 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1    (UMN173F)_H10_BE500863Ld04P176D03P176E061F1_066.ab1     1 
  402  C (UMN173R)_H10_BE500863Ld04P176D03P176E061R1_066.ab1   562 
  406    (UMN173F)_H10_BE500863Ld04P176D03P176E061F1_066.ab1   406 
  422  C (UMN173R)_H10_BE500863Ld04P176D03P176E061R1_066.ab1   542 
  434    (UMN173F)_H10_BE500863Ld04P176D03P176E061F1_066.ab1   434 
  490  C (UMN173R)_H10_BE500863Ld04P176D03P176E061R1_066.ab1   474 
Contig length: old 963, new 963

Contig length: old 963, new 963
New start: 0