No. words: 1532; after pruning: 1506


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.8 (1,1:903)  616  0.16 0.00 0.00  (UMN173F)_C11_BE500863Ld07P176D03P176E061F1_091.ab1       69   696 (0)  C (UMN173R)_C11_BE500863Ld07P176D03P176E061R1_091.ab1   (0)   836   209 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1    (UMN173F)_C11_BE500863Ld07P176D03P176E061F1_091.ab1     1 
  297  C (UMN173R)_C11_BE500863Ld07P176D03P176E061R1_091.ab1   608 
  301    (UMN173F)_C11_BE500863Ld07P176D03P176E061F1_091.ab1   301 
  321  C (UMN173R)_C11_BE500863Ld07P176D03P176E061R1_091.ab1   584 
  333    (UMN173F)_C11_BE500863Ld07P176D03P176E061F1_091.ab1   333 
  353  C (UMN173R)_C11_BE500863Ld07P176D03P176E061R1_091.ab1   552 
  365    (UMN173F)_C11_BE500863Ld07P176D03P176E061F1_091.ab1   365 
  369  C (UMN173R)_C11_BE500863Ld07P176D03P176E061R1_091.ab1   536 
  385    (UMN173F)_C11_BE500863Ld07P176D03P176E061F1_091.ab1   385 
  393  C (UMN173R)_C11_BE500863Ld07P176D03P176E061R1_091.ab1   512 
  397    (UMN173F)_C11_BE500863Ld07P176D03P176E061F1_091.ab1   397 
  405  C (UMN173R)_C11_BE500863Ld07P176D03P176E061R1_091.ab1   500 
  421    (UMN173F)_C11_BE500863Ld07P176D03P176E061F1_091.ab1   421 
  429  C (UMN173R)_C11_BE500863Ld07P176D03P176E061R1_091.ab1   476 
  437    (UMN173F)_C11_BE500863Ld07P176D03P176E061F1_091.ab1   437 
  445  C (UMN173R)_C11_BE500863Ld07P176D03P176E061R1_091.ab1   460 
  453    (UMN173F)_C11_BE500863Ld07P176D03P176E061F1_091.ab1   453 
  461  C (UMN173R)_C11_BE500863Ld07P176D03P176E061R1_091.ab1   444 
Contig length: old 904, new 904

Contig length: old 904, new 904
New start: 0