No. words: 1405; after pruning: 1379


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:856)  544  0.00 0.00 0.00  (UMN173F)_D11_BE500863Ld08P176D03P176E061F1_089.ab1       69   616 (0)  C (UMN173R)_D11_BE500863Ld08P176D03P176E061R1_089.ab1   (0)   789   242 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1    (UMN173F)_D11_BE500863Ld08P176D03P176E061F1_089.ab1     1 
  108  C (UMN173R)_D11_BE500863Ld08P176D03P176E061R1_089.ab1   750 
  112    (UMN173F)_D11_BE500863Ld08P176D03P176E061F1_089.ab1   112 
  276  C (UMN173R)_D11_BE500863Ld08P176D03P176E061R1_089.ab1   582 
  288    (UMN173F)_D11_BE500863Ld08P176D03P176E061F1_089.ab1   288 
  312  C (UMN173R)_D11_BE500863Ld08P176D03P176E061R1_089.ab1   546 
  316    (UMN173F)_D11_BE500863Ld08P176D03P176E061F1_089.ab1   316 
  324  C (UMN173R)_D11_BE500863Ld08P176D03P176E061R1_089.ab1   534 
Contig length: old 857, new 857

Contig length: old 857, new 857
New start: 0