No. words: 1560; after pruning: 1534


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 14.2 (1,1:907)  642  0.00 0.00 0.00  (UMN173F)_E11_BE500863Ld09P176D03P176E061F1_087.ab1       52   702 (0)  C (UMN173R)_E11_BE500863Ld09P176D03P176E061R1_087.ab1   (1)   857   207 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  326 nodes

 165 str. conn. components

Path
    1    (UMN173F)_E11_BE500863Ld09P176D03P176E061F1_087.ab1     1 
  329  C (UMN173R)_E11_BE500863Ld09P176D03P176E061R1_087.ab1   580 
  341    (UMN173F)_E11_BE500863Ld09P176D03P176E061F1_087.ab1   341 
  349  C (UMN173R)_E11_BE500863Ld09P176D03P176E061R1_087.ab1   560 
  357    (UMN173F)_E11_BE500863Ld09P176D03P176E061F1_087.ab1   357 
  361  C (UMN173R)_E11_BE500863Ld09P176D03P176E061R1_087.ab1   548 
Contig length: old 908, new 908

Contig length: old 908, new 908
New start: 0