No. words: 1679; after pruning: 1653


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.0 (1,1:957)  713  0.00 0.00 0.00  (UMN173F)_F11_BE500863Ld10P176D03P176E061F1_085.ab1      118   838 (0)  C (UMN173R)_F11_BE500863Ld10P176D03P176E061R1_085.ab1   (0)   841   121 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  362 nodes

 183 str. conn. components

Path
    1    (UMN173F)_F11_BE500863Ld10P176D03P176E061F1_085.ab1     1 
  413  C (UMN173R)_F11_BE500863Ld10P176D03P176E061R1_085.ab1   546 
  433    (UMN173F)_F11_BE500863Ld10P176D03P176E061F1_085.ab1   433 
  441  C (UMN173R)_F11_BE500863Ld10P176D03P176E061R1_085.ab1   518 
  461    (UMN173F)_F11_BE500863Ld10P176D03P176E061F1_085.ab1   461 
  485  C (UMN173R)_F11_BE500863Ld10P176D03P176E061R1_085.ab1   474 
  497    (UMN173F)_F11_BE500863Ld10P176D03P176E061F1_085.ab1   497 
  517  C (UMN173R)_F11_BE500863Ld10P176D03P176E061R1_085.ab1   442 
Contig length: old 958, new 958

Contig length: old 958, new 958
New start: 0