No. words: 1688; after pruning: 1662


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 15.9 (1,1:951)  721  0.14 0.00 0.00  (UMN173F)_G11_BE500863Ld11P176D03P176E061F1_083.ab1       87   817 (0)  C (UMN173R)_G11_BE500863Ld11P176D03P176E061R1_083.ab1   (5)   866   136 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1    (UMN173F)_G11_BE500863Ld11P176D03P176E061F1_083.ab1     1 
  378  C (UMN173R)_G11_BE500863Ld11P176D03P176E061R1_083.ab1   575 
  390    (UMN173F)_G11_BE500863Ld11P176D03P176E061F1_083.ab1   390 
  398  C (UMN173R)_G11_BE500863Ld11P176D03P176E061R1_083.ab1   555 
  434    (UMN173F)_G11_BE500863Ld11P176D03P176E061F1_083.ab1   434 
  446  C (UMN173R)_G11_BE500863Ld11P176D03P176E061R1_083.ab1   507 
  502    (UMN173F)_G11_BE500863Ld11P176D03P176E061F1_083.ab1   502 
  518  C (UMN173R)_G11_BE500863Ld11P176D03P176E061R1_083.ab1   435 
  558    (UMN173F)_G11_BE500863Ld11P176D03P176E061F1_083.ab1   558 
  562  C (UMN173R)_G11_BE500863Ld11P176D03P176E061R1_083.ab1   391 
Contig length: old 952, new 952

Contig length: old 952, new 952
New start: 0