No. words: 1699; after pruning: 1673


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.6 (1,1:946)  741  0.13 0.00 0.00  (UMN172F)_E05_BE500863Tu01P176D03P176E061F1_039.ab1       79   830 (0)  C (UMN172R)_E05_BE500863Tu01P176D03P176E061R1_039.ab1   (0)   869   118 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  374 nodes

 189 str. conn. components

Path
    1    (UMN172F)_E05_BE500863Tu01P176D03P176E061F1_039.ab1     1 
  404  C (UMN172R)_E05_BE500863Tu01P176D03P176E061R1_039.ab1   544 
  448    (UMN172F)_E05_BE500863Tu01P176D03P176E061F1_039.ab1   448 
  548  C (UMN172R)_E05_BE500863Tu01P176D03P176E061R1_039.ab1   400 
  572    (UMN172F)_E05_BE500863Tu01P176D03P176E061F1_039.ab1   572 
  580  C (UMN172R)_E05_BE500863Tu01P176D03P176E061R1_039.ab1   368 
Contig length: old 947, new 947

Contig length: old 947, new 947
New start: 0