No. words: 1707; after pruning: 1667


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.1 (1,1:974)  719  0.27 0.00 0.00  (UMN172F)_F05_BE500863Tu02P176D03P176E061F1_037.ab1      109   840 (0)  C (UMN172R)_F05_BE500863Tu02P176D03P176E061R1_037.ab1   (0)   867   136 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  362 nodes

 183 str. conn. components

Path
    1    (UMN172F)_F05_BE500863Tu02P176D03P176E061F1_037.ab1     1 
  398  C (UMN172R)_F05_BE500863Tu02P176D03P176E061R1_037.ab1   578 
  454    (UMN172F)_F05_BE500863Tu02P176D03P176E061F1_037.ab1   454 
  470  C (UMN172R)_F05_BE500863Tu02P176D03P176E061R1_037.ab1   506 
  494    (UMN172F)_F05_BE500863Tu02P176D03P176E061F1_037.ab1   494 
  538  C (UMN172R)_F05_BE500863Tu02P176D03P176E061R1_037.ab1   438 
  546    (UMN172F)_F05_BE500863Tu02P176D03P176E061F1_037.ab1   546 
  578  C (UMN172R)_F05_BE500863Tu02P176D03P176E061R1_037.ab1   398 
  586    (UMN172F)_F05_BE500863Tu02P176D03P176E061F1_037.ab1   586 
  602  C (UMN172R)_F05_BE500863Tu02P176D03P176E061R1_037.ab1   374 
Contig length: old 975, new 975

Contig length: old 975, new 975
New start: 0