No. words: 1352; after pruning: 1326


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:640)  633  0.00 0.00 0.16  (UMN172F)_D06_BE500863Tu02P176E03P176E061F1_042.ab1        1   641 (37)  C (UMN172R)_D06_BE500863Tu02P176E03P176E061R1_042.ab1   (34)   640     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C (UMN172R)_D06_BE500863Tu02P176E03P176E061R1_042.ab1   674 
  152    (UMN172F)_D06_BE500863Tu02P176E03P176E061F1_042.ab1   118 
  388  C (UMN172R)_D06_BE500863Tu02P176E03P176E061R1_042.ab1   287 
  432    (UMN172F)_D06_BE500863Tu02P176E03P176E061F1_042.ab1   398 
  492  C (UMN172R)_D06_BE500863Tu02P176E03P176E061R1_042.ab1   183 
  512    (UMN172F)_D06_BE500863Tu02P176E03P176E061F1_042.ab1   478 
  568  C (UMN172R)_D06_BE500863Tu02P176E03P176E061R1_042.ab1   107 
  580    (UMN172F)_D06_BE500863Tu02P176E03P176E061F1_042.ab1   546 
  596  C (UMN172R)_D06_BE500863Tu02P176E03P176E061R1_042.ab1    79 
  604    (UMN172F)_D06_BE500863Tu02P176E03P176E061F1_042.ab1   570 
  608  C (UMN172R)_D06_BE500863Tu02P176E03P176E061R1_042.ab1    67 
  612    (UMN172F)_D06_BE500863Tu02P176E03P176E061F1_042.ab1   578 
  616  C (UMN172R)_D06_BE500863Tu02P176E03P176E061R1_042.ab1    59 
  624    (UMN172F)_D06_BE500863Tu02P176E03P176E061F1_042.ab1   590 
  636  C (UMN172R)_D06_BE500863Tu02P176E03P176E061R1_042.ab1    39 
  644    (UMN172F)_D06_BE500863Tu02P176E03P176E061F1_042.ab1   610 
Contig length: old 711, new 712

Contig length: old 712, new 712
New start: 0