No. words: 1690; after pruning: 1664


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.8 (1,1:806)  781  0.00 0.12 0.00  (UMN172F)_C07_BE517732As01P176G03P176G061F1_059.ab1        1   807 (34)  C (UMN172R)_C07_BE517732As01P176G03P176G061R1_059.ab1   (41)   808     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  400 nodes

 202 str. conn. components

Path
    1  C (UMN172R)_C07_BE517732As01P176G03P176G061R1_059.ab1   849 
   49    (UMN172F)_C07_BE517732As01P176G03P176G061F1_059.ab1     8 
   53  C (UMN172R)_C07_BE517732As01P176G03P176G061R1_059.ab1   797 
   69    (UMN172F)_C07_BE517732As01P176G03P176G061F1_059.ab1    27 
  613  C (UMN172R)_C07_BE517732As01P176G03P176G061R1_059.ab1   237 
  829    (UMN172F)_C07_BE517732As01P176G03P176G061F1_059.ab1   787 
Contig length: old 883, new 883

Contig length: old 883, new 883
New start: 0