No. words: 1797; after pruning: 1771


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 17.9 (1,1:866)  806  0.35 0.23 0.23  (UMN172F)_E07_BE517732At01P176G03P176G061F1_055.ab1        1   866 (25)  C (UMN172R)_E07_BE517732At01P176G03P176G061R1_055.ab1   (40)   866     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  422 nodes

 213 str. conn. components

Path
    1  C (UMN172R)_E07_BE517732At01P176G03P176G061R1_055.ab1   906 
   44    (UMN172F)_E07_BE517732At01P176G03P176G061F1_055.ab1     4 
  314  C (UMN172R)_E07_BE517732At01P176G03P176G061R1_055.ab1   593 
  530    (UMN172F)_E07_BE517732At01P176G03P176G061F1_055.ab1   490 
  650  C (UMN172R)_E07_BE517732At01P176G03P176G061R1_055.ab1   257 
  902    (UMN172F)_E07_BE517732At01P176G03P176G061F1_055.ab1   862 
Contig length: old 930, new 931

Contig length: old 931, new 931
New start: 0