No. words: 1771; after pruning: 1745


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.6 (1,1:865)  800  1.04 0.12 0.00  (UMN172F)_F07_BE517732At02P176G03P176G061F1_053.ab1        1   865 (15)  C (UMN172R)_F07_BE517732At02P176G03P176G061R1_053.ab1   (25)   866     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  420 nodes

 212 str. conn. components

Path
    1  C (UMN172R)_F07_BE517732At02P176G03P176G061R1_053.ab1   891 
   29    (UMN172F)_F07_BE517732At02P176G03P176G061F1_053.ab1     4 
  294  C (UMN172R)_F07_BE517732At02P176G03P176G061R1_053.ab1   597 
  478    (UMN172F)_F07_BE517732At02P176G03P176G061F1_053.ab1   453 
  506  C (UMN172R)_F07_BE517732At02P176G03P176G061R1_053.ab1   385 
  854    (UMN172F)_F07_BE517732At02P176G03P176G061F1_053.ab1   829 
  862  C (UMN172R)_F07_BE517732At02P176G03P176G061R1_053.ab1    29 
  878    (UMN172F)_F07_BE517732At02P176G03P176G061F1_053.ab1   853 
  882  C (UMN172R)_F07_BE517732At02P176G03P176G061R1_053.ab1     9 
  886    (UMN172F)_F07_BE517732At02P176G03P176G061F1_053.ab1   861 
Contig length: old 905, new 905

Contig length: old 905, new 906
New start: 0 
I Change at: 45; seg lengths: entry 2, contig 1