No. words: 1555; after pruning: 1529


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:762)  720  0.13 0.00 0.00  (UMN173F)_B12_BE517732Ld02P176G03P176G061F1_094.ab1       16   763 (44)  C (UMN173R)_B12_BE517732Ld02P176G03P176G061R1_094.ab1   (0)   748     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1    (UMN173F)_B12_BE517732Ld02P176G03P176G061F1_094.ab1     1 
   78  C (UMN173R)_B12_BE517732Ld02P176G03P176G061R1_094.ab1   686 
   86    (UMN173F)_B12_BE517732Ld02P176G03P176G061F1_094.ab1    86 
  142  C (UMN173R)_B12_BE517732Ld02P176G03P176G061R1_094.ab1   622 
  146    (UMN173F)_B12_BE517732Ld02P176G03P176G061F1_094.ab1   146 
  410  C (UMN173R)_B12_BE517732Ld02P176G03P176G061R1_094.ab1   354 
  758    (UMN173F)_B12_BE517732Ld02P176G03P176G061F1_094.ab1   758 
Contig length: old 807, new 807

Contig length: old 807, new 807
New start: 0 
S Change at: 38; seg lengths: entry 1, contig 1