No. words: 1631; after pruning: 1605


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.8 (1,1:769)  733  0.52 0.00 0.00  (UMN173F)_D12_BE517732Ld04P176G03P176G061F1_090.ab1        1   770 (49)  C (UMN173R)_D12_BE517732Ld04P176G03P176G061R1_090.ab1   (42)   770     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1  C (UMN173R)_D12_BE517732Ld04P176G03P176G061R1_090.ab1   812 
   50    (UMN173F)_D12_BE517732Ld04P176G03P176G061F1_090.ab1     8 
   66  C (UMN173R)_D12_BE517732Ld04P176G03P176G061R1_090.ab1   747 
   70    (UMN173F)_D12_BE517732Ld04P176G03P176G061F1_090.ab1    28 
   78  C (UMN173R)_D12_BE517732Ld04P176G03P176G061R1_090.ab1   735 
   93    (UMN173F)_D12_BE517732Ld04P176G03P176G061F1_090.ab1    51 
  101  C (UMN173R)_D12_BE517732Ld04P176G03P176G061R1_090.ab1   712 
  109    (UMN173F)_D12_BE517732Ld04P176G03P176G061F1_090.ab1    67 
  113  C (UMN173R)_D12_BE517732Ld04P176G03P176G061R1_090.ab1   700 
  137    (UMN173F)_D12_BE517732Ld04P176G03P176G061F1_090.ab1    95 
  145  C (UMN173R)_D12_BE517732Ld04P176G03P176G061R1_090.ab1   668 
  153    (UMN173F)_D12_BE517732Ld04P176G03P176G061F1_090.ab1   111 
  177  C (UMN173R)_D12_BE517732Ld04P176G03P176G061R1_090.ab1   636 
  193    (UMN173F)_D12_BE517732Ld04P176G03P176G061F1_090.ab1   151 
  197  C (UMN173R)_D12_BE517732Ld04P176G03P176G061R1_090.ab1   616 
  209    (UMN173F)_D12_BE517732Ld04P176G03P176G061F1_090.ab1   167 
  349  C (UMN173R)_D12_BE517732Ld04P176G03P176G061R1_090.ab1   464 
  401    (UMN173F)_D12_BE517732Ld04P176G03P176G061F1_090.ab1   359 
  421  C (UMN173R)_D12_BE517732Ld04P176G03P176G061R1_090.ab1   392 
  701    (UMN173F)_D12_BE517732Ld04P176G03P176G061F1_090.ab1   659 
  705  C (UMN173R)_D12_BE517732Ld04P176G03P176G061R1_090.ab1   108 
  801    (UMN173F)_D12_BE517732Ld04P176G03P176G061F1_090.ab1   759 
Contig length: old 861, new 861

Contig length: old 861, new 861
New start: 0