No. words: 1548; after pruning: 1522


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 14.6 (1,1:731)  676  0.82 0.14 0.14  (UMN173F)_E12_BE517732Ld05P176G03P176G061F1_088.ab1        1   731 (12)  C (UMN173R)_E12_BE517732Ld05P176G03P176G061R1_088.ab1   (74)   731     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1  C (UMN173R)_E12_BE517732Ld05P176G03P176G061R1_088.ab1   805 
   78    (UMN173F)_E12_BE517732Ld05P176G03P176G061F1_088.ab1     4 
  142  C (UMN173R)_E12_BE517732Ld05P176G03P176G061R1_088.ab1   664 
  163    (UMN173F)_E12_BE517732Ld05P176G03P176G061F1_088.ab1    89 
  211  C (UMN173R)_E12_BE517732Ld05P176G03P176G061R1_088.ab1   595 
  215    (UMN173F)_E12_BE517732Ld05P176G03P176G061F1_088.ab1   141 
  339  C (UMN173R)_E12_BE517732Ld05P176G03P176G061R1_088.ab1   467 
  563    (UMN173F)_E12_BE517732Ld05P176G03P176G061F1_088.ab1   489 
  591  C (UMN173R)_E12_BE517732Ld05P176G03P176G061R1_088.ab1   215 
  743    (UMN173F)_E12_BE517732Ld05P176G03P176G061F1_088.ab1   669 
  751  C (UMN173R)_E12_BE517732Ld05P176G03P176G061R1_088.ab1    55 
  759    (UMN173F)_E12_BE517732Ld05P176G03P176G061F1_088.ab1   685 
  767  C (UMN173R)_E12_BE517732Ld05P176G03P176G061R1_088.ab1    39 
  775    (UMN173F)_E12_BE517732Ld05P176G03P176G061F1_088.ab1   701 
  792  C (UMN173R)_E12_BE517732Ld05P176G03P176G061R1_088.ab1    14 
  796    (UMN173F)_E12_BE517732Ld05P176G03P176G061F1_088.ab1   722 
Contig length: old 816, new 817

Contig length: old 817, new 818
New start: 0 
I Change at: 107; seg lengths: entry 5, contig 4