No. words: 1650; after pruning: 1624


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.9 (1,1:764)  737  0.13 0.00 0.00  (UMN173F)_F12_BE517732Ld06P176G03P176G061F1_086.ab1        1   765 (47)  C (UMN173R)_F12_BE517732Ld06P176G03P176G061R1_086.ab1   (73)   765     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1  C (UMN173R)_F12_BE517732Ld06P176G03P176G061R1_086.ab1   838 
   77    (UMN173F)_F12_BE517732Ld06P176G03P176G061F1_086.ab1     4 
   97  C (UMN173R)_F12_BE517732Ld06P176G03P176G061R1_086.ab1   742 
  101    (UMN173F)_F12_BE517732Ld06P176G03P176G061F1_086.ab1    28 
  109  C (UMN173R)_F12_BE517732Ld06P176G03P176G061R1_086.ab1   730 
  121    (UMN173F)_F12_BE517732Ld06P176G03P176G061F1_086.ab1    48 
  153  C (UMN173R)_F12_BE517732Ld06P176G03P176G061R1_086.ab1   686 
  161    (UMN173F)_F12_BE517732Ld06P176G03P176G061F1_086.ab1    88 
  217  C (UMN173R)_F12_BE517732Ld06P176G03P176G061R1_086.ab1   622 
  221    (UMN173F)_F12_BE517732Ld06P176G03P176G061F1_086.ab1   148 
  309  C (UMN173R)_F12_BE517732Ld06P176G03P176G061R1_086.ab1   530 
  449    (UMN173F)_F12_BE517732Ld06P176G03P176G061F1_086.ab1   376 
  485  C (UMN173R)_F12_BE517732Ld06P176G03P176G061R1_086.ab1   354 
  489    (UMN173F)_F12_BE517732Ld06P176G03P176G061F1_086.ab1   416 
  601  C (UMN173R)_F12_BE517732Ld06P176G03P176G061R1_086.ab1   238 
  801    (UMN173F)_F12_BE517732Ld06P176G03P176G061F1_086.ab1   728 
  805  C (UMN173R)_F12_BE517732Ld06P176G03P176G061R1_086.ab1    34 
  833    (UMN173F)_F12_BE517732Ld06P176G03P176G061F1_086.ab1   760 
Contig length: old 885, new 885

Contig length: old 885, new 885
New start: 0