No. words: 1051; after pruning: 1025


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:369)  352  0.00 0.00 0.27  (UMN169F)_A08_BE606250Ld13P003D05P088H121F1_064.ab1        1   370 (143)  C (UMN169R)_A08_BE606250Ld13P003D05P088H121R1_064.ab1   (169)   369     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1  C (UMN169R)_A08_BE606250Ld13P003D05P088H121R1_064.ab1   538 
  241    (UMN169F)_A08_BE606250Ld13P003D05P088H121F1_064.ab1    72 
  245  C (UMN169R)_A08_BE606250Ld13P003D05P088H121R1_064.ab1   294 
  297    (UMN169F)_A08_BE606250Ld13P003D05P088H121F1_064.ab1   128 
  313  C (UMN169R)_A08_BE606250Ld13P003D05P088H121R1_064.ab1   226 
  321    (UMN169F)_A08_BE606250Ld13P003D05P088H121F1_064.ab1   152 
  329  C (UMN169R)_A08_BE606250Ld13P003D05P088H121R1_064.ab1   210 
  349    (UMN169F)_A08_BE606250Ld13P003D05P088H121F1_064.ab1   180 
  369  C (UMN169R)_A08_BE606250Ld13P003D05P088H121R1_064.ab1   170 
  377    (UMN169F)_A08_BE606250Ld13P003D05P088H121F1_064.ab1   208 
Contig length: old 681, new 682

Contig length: old 682, new 682
New start: 0