No. words: 1049; after pruning: 1023


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:368)  352  0.00 0.00 0.27  (UMN169F)_B08_BE606250Ld14P003D05P088H121F1_062.ab1        1   369 (142)  C (UMN169R)_B08_BE606250Ld14P003D05P088H121R1_062.ab1   (170)   368     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1  C (UMN169R)_B08_BE606250Ld14P003D05P088H121R1_062.ab1   538 
  350    (UMN169F)_B08_BE606250Ld14P003D05P088H121F1_062.ab1   180 
Contig length: old 680, new 681

Contig length: old 681, new 681
New start: 0