No. words: 1036; after pruning: 1010


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:354)  342  0.00 0.00 0.00  (UMN169F)_D08_BE606250Ld16P003D05P088H121F1_058.ab1        1   355 (153)  C (UMN169R)_D08_BE606250Ld16P003D05P088H121R1_058.ab1   (173)   355     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C (UMN169R)_D08_BE606250Ld16P003D05P088H121R1_058.ab1   528 
  201    (UMN169F)_D08_BE606250Ld16P003D05P088H121F1_058.ab1    28 
  205  C (UMN169R)_D08_BE606250Ld16P003D05P088H121R1_058.ab1   324 
  241    (UMN169F)_D08_BE606250Ld16P003D05P088H121F1_058.ab1    68 
  249  C (UMN169R)_D08_BE606250Ld16P003D05P088H121R1_058.ab1   280 
  301    (UMN169F)_D08_BE606250Ld16P003D05P088H121F1_058.ab1   128 
  305  C (UMN169R)_D08_BE606250Ld16P003D05P088H121R1_058.ab1   224 
  317    (UMN169F)_D08_BE606250Ld16P003D05P088H121F1_058.ab1   144 
  329  C (UMN169R)_D08_BE606250Ld16P003D05P088H121R1_058.ab1   200 
  349    (UMN169F)_D08_BE606250Ld16P003D05P088H121F1_058.ab1   176 
  369  C (UMN169R)_D08_BE606250Ld16P003D05P088H121R1_058.ab1   160 
  373    (UMN169F)_D08_BE606250Ld16P003D05P088H121F1_058.ab1   200 
  397  C (UMN169R)_D08_BE606250Ld16P003D05P088H121R1_058.ab1   132 
  405    (UMN169F)_D08_BE606250Ld16P003D05P088H121F1_058.ab1   232 
  433  C (UMN169R)_D08_BE606250Ld16P003D05P088H121R1_058.ab1    96 
  441    (UMN169F)_D08_BE606250Ld16P003D05P088H121F1_058.ab1   268 
  453  C (UMN169R)_D08_BE606250Ld16P003D05P088H121R1_058.ab1    76 
  469    (UMN169F)_D08_BE606250Ld16P003D05P088H121F1_058.ab1   296 
Contig length: old 681, new 681

Contig length: old 681, new 681
New start: 0