No. words: 1058; after pruning: 1032 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 2 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 0 0.0 6.9 (1,1:365) 344 0.00 0.00 0.54 (UMN169F)_G08_BE606250Ld19P003D05P088H121F1_052.ab1 1 367 (150) C (UMN169R)_G08_BE606250Ld19P003D05P088H121R1_052.ab1 (176) 365 1 * Pass: 3 #reads #contigs (not counting singlets) 2 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 1 0 Gap # merges # failures size 0 1 0 Offset 0 1 Pass 4 Gap Score Pass: 4 #reads #contigs (not counting singlets) 2 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Read equivalence class histogram: 2 1 Chimera merges: Contig 1: 178 nodes 91 str. conn. components Path 1 C (UMN169R)_G08_BE606250Ld19P003D05P088H121R1_052.ab1 541 244 (UMN169F)_G08_BE606250Ld19P003D05P088H121F1_052.ab1 68 252 C (UMN169R)_G08_BE606250Ld19P003D05P088H121R1_052.ab1 290 324 (UMN169F)_G08_BE606250Ld19P003D05P088H121F1_052.ab1 148 328 C (UMN169R)_G08_BE606250Ld19P003D05P088H121R1_052.ab1 214 352 (UMN169F)_G08_BE606250Ld19P003D05P088H121F1_052.ab1 176 372 C (UMN169R)_G08_BE606250Ld19P003D05P088H121R1_052.ab1 170 376 (UMN169F)_G08_BE606250Ld19P003D05P088H121F1_052.ab1 200 400 C (UMN169R)_G08_BE606250Ld19P003D05P088H121R1_052.ab1 142 408 (UMN169F)_G08_BE606250Ld19P003D05P088H121F1_052.ab1 232 452 C (UMN169R)_G08_BE606250Ld19P003D05P088H121R1_052.ab1 90 472 (UMN169F)_G08_BE606250Ld19P003D05P088H121F1_052.ab1 296 Contig length: old 692, new 693 Contig length: old 693, new 693 New start: 0