No. words: 1050; after pruning: 1024


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:369)  352  0.00 0.00 0.27  (UMN169F)_H08_BE606250Ld20P003D05P088H121F1_050.ab1        1   370 (168)  C (UMN169R)_H08_BE606250Ld20P003D05P088H121R1_050.ab1   (143)   369     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1  C (UMN169R)_H08_BE606250Ld20P003D05P088H121R1_050.ab1   512 
  275    (UMN169F)_H08_BE606250Ld20P003D05P088H121F1_050.ab1   132 
  279  C (UMN169R)_H08_BE606250Ld20P003D05P088H121R1_050.ab1   234 
  295    (UMN169F)_H08_BE606250Ld20P003D05P088H121F1_050.ab1   152 
  307  C (UMN169R)_H08_BE606250Ld20P003D05P088H121R1_050.ab1   206 
  323    (UMN169F)_H08_BE606250Ld20P003D05P088H121F1_050.ab1   180 
  343  C (UMN169R)_H08_BE606250Ld20P003D05P088H121R1_050.ab1   170 
  347    (UMN169F)_H08_BE606250Ld20P003D05P088H121F1_050.ab1   204 
  371  C (UMN169R)_H08_BE606250Ld20P003D05P088H121R1_050.ab1   142 
  379    (UMN169F)_H08_BE606250Ld20P003D05P088H121F1_050.ab1   236 
  407  C (UMN169R)_H08_BE606250Ld20P003D05P088H121R1_050.ab1   106 
  411    (UMN169F)_H08_BE606250Ld20P003D05P088H121F1_050.ab1   268 
  439  C (UMN169R)_H08_BE606250Ld20P003D05P088H121R1_050.ab1    74 
  443    (UMN169F)_H08_BE606250Ld20P003D05P088H121F1_050.ab1   300 
Contig length: old 680, new 681

Contig length: old 681, new 681
New start: 0