No. words: 3004; after pruning: 2952


Histogram of relative pair offsets, for read pairs with multiple alignments:
81    10
82    14
99    12

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.5 (1,1:592)  569  0.00 0.17 0.00  (UMN171F)_C06_BF429203Ld02P027E02P027E081F1_044.ab1        1   590 (152)  C (UMN171R)_C06_BF429203Ld02P027E02P027E081R1_044.ab1   (171)   594     4 *
Merge:(0)    0    0.0 11.9 (1,1:586)  540  1.19 0.34 0.00  (UMN172F)_F10_BF429203Ld02P027E02P027E081F1_070.ab1        1   586 (183)  C (UMN172R)_F10_BF429203Ld02P027E02P027E081R1_070.ab1   (140)   588     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 3       1        0

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    
 -768  -768  141 145    706     I -651- 54
Fail: (1)  706    0.0 2.6 (2,2:596)  117  0.00 0.00 0.00  (UMN171R)_C06_BF429203Ld02P027E02P027E081R1_044.ab1      649   765 (0)    (UMN172F)_F10_BF429203Ld02P027E02P027E081F1_070.ab1      653   769 (0)  

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        1

Gap   # merges  # failures
 size
706       0        1

Offset
  0       1 
  3       1 

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  280 nodes

 142 str. conn. components

Path
    1  C (UMN172R)_F10_BF429203Ld02P027E02P027E081R1_070.ab1   728 
  637    (UMN172F)_F10_BF429203Ld02P027E02P027E081F1_070.ab1   495 
  649  C (UMN172R)_F10_BF429203Ld02P027E02P027E081R1_070.ab1    80 
  685    (UMN172F)_F10_BF429203Ld02P027E02P027E081F1_070.ab1   543 
Contig length: old 910, new 911

Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C (UMN171R)_C06_BF429203Ld02P027E02P027E081R1_044.ab1   765 
  655    (UMN171F)_C06_BF429203Ld02P027E02P027E081F1_044.ab1   483 
Contig length: old 914, new 914

Contig length: old 911, new 911
New start: 0 

Contig length: old 914, new 914
New start: 0